1

How was Root able to understand that the Machine exists in the first place in Person of Interest?

I can't remember that it was revealed in any episode.

3

Remember how good Root was as a hacker. It was when she hacked into Team Finch's private network through a honeypot network in episode 13 of season 1: Root Cause

"Wait, something's wrong. We didn't hack in, we were let in. It's a honeypot! Incredibly sophisticated... they're using a worm to infect any devices connected to our private network, including our phones. They're listening to us right now, destroy your phone. You know how to find me." (Finch)

Root:

....Root briefly hacks into Finch's network by creating a honeypot, presumably learning about Finch and The Machine in the process.

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