I'm in S01E10 of Prison Break, so far I see that Madam Vice President does not want Lincoln Burrows to be exonerated. Philly Falzone wants Fibonacci because he got to know about the dealings of the Mafia.
I'm not sure I remember but has Madam Vice President ever mentioned the need to find Fibonacci before?
Also, in the S01E10, one of those two goons who're after Lincoln Burrows's lawyers pay Madam Vice President a visit and tells her "These guys are in on this thing now, and there's no going back". Who are "these guys" that he's talking about?