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The main explanation I've seen, and that seems to be pretty official, was that the plug thing Neo has in the back of his head worked as a wireless device. Well, as you will read below, this isn't actually specified like this, but since the source speaks of the "brain becoming a wireless connection", it seems the safest thing to assume. In any case, no ...

No, a pretty much official explanation exists. And the question is not really "open". As I've stated in this answer, it's explained by the fact that when Neo comes into contact with the Source (i.e. when he meets the Architect), his brain becomes a wireless connection. After all, the real time in the Matrix franchise is set in a tech-wise advanced future, ...

I think the answer is that it was suggested a supermatrix, because it's more likely within the matrix's universe, considering the machine's cold logic, but the idea was possible abandoned. Why a super-matrix? The machines where able to defeat Neo and Agent Smith, and his viral propagation, at the same time, and took Zion after the battle. If the machines' ...

If you want to force an explanation,the idea is that Neo is like an virus inside matrix same as one virus would be on your computer,but when Neo is unplugged/your pc powered off it can't pose any threat. But if the virus was so good,and your hardware(motherboard BIOS) poorly built/programmed...the virus could theoretically take control of your ...